Emmanuel Quiles hit .262 across 37 games with the Eugene Emeralds. He went 38-for-145 with seven doubles, four homers, 19 runs scored and 15 RBI. He posted a .305 on-base percentage with a 7-to-38 walk-to-strikeout ratio while getting hit by two pitches. He stole one base in two attempts and committed six errors in the field with six passed balls. He hit .224 with runners in scoring position in 49 at-bats and grounded into six double plays. Quiles threw out 18-of-45 runners attempting to steal, good for 40 percent.

2008

Quiles hit .211 with 31 hits in 147 at-bats with the Eugene Emeralds. He collected four doubles, one homer, 15 runs scored, and 11 RBIs across 42 games. He also drew 14 walks compared to 34 strikeouts for a .288 on-base percentage. Quiles threw out 27-of-65 base runners attempting to steal, good for 41.5 percent.

2007

Emmanuel Quiles hit .171 with six hits in 35 at bats for the AZL Padres. In 16 games he had four RBIs and four runs scored while drawing three walks and striking out six times. He threw out four of the 12 runners attempting to steal.